species:   Artha
pid:       MI0005110
parent:    ath-MIR780
paralog:   
locus:     4:8504141-8504314
matures:   ['UUCUUCGUGAAUAUCUGGCAU', 'AUCAGAUAUUUCACGAAGAUAU']
srr:       SRR9216049
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram 4:8504141-8504314

0 out of bounds
4 alignments
4 proper strand
2 stranded perfect matches

    ************************                                                                                                                       ***********************    
CAAGAUAUCAGAUAUUUCACGAAGAUAUCUGCAUAACAGCUACGAGGAAAUUGUGAUUUUAUCGUUUCACAAACAUCAACAGCUCCAUGGAUCGUUAUGGACGGAUAAAUCACAAUCACUAUCCUUUUUCUAGCAGCUGUUGAGCAGGUUUCUUCGUGAAUAUCUGGCAUUUUG
((((((.(((((((((.((((((((.((((((.((((((((.(.(((((((((((((((.(((..((((..((((((..((......))))).))).))))..)))))))))))))..........))))).).)))))))).)))))).))))))))))))))))).))))))
-----------------------------------------------------------------------------------------------------------------------------------------------------UUCUUCGUGAAUAUCUGGCAU---- l=21 a=1 c
------AUCAGAUAUUUCACGAAGAUAU-------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=0 c*
-----------------------------------------------------------------------------------------------------------------------------------------------------UUCUUCGUGAAUAUCUGGCAU---- l=21 a=1 ma
------AUCAGAUAUUUCACGAAGAUAU-------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=0 ma*

-----------------------------------------------------------------------------------------------------------------------------------------------------UUCUUCGUGAAUAUCUGGCAU---- l=21 a=1 (c,ma)
-----------------------------------------------------------------------------------------------------------------------------------------------------UUCUUCGUGAAUAUCUGGCAUg--- l=22 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------UUCUUCGUGAAUAUCUGGCAUU--- l=22 a=1 
------------------------------------------------------------------------------------------------------------------------------------GCAGCUGUUGAGCAGGUUUCUUCa------------------ l=24 a=1 

mb-01011
ax-1011011
ku-01
ss-110111111100
fn-011
